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Abstract
The aim of this study was to determine the prevalence and antibiotic susceptibility profiles of E. coli in African catfish (Clarias gariepinus) in Maiduguri, Borno State, Nigeria. A total of 300 samples were collected from three major fish markets. E. coli was isolated and identified based on morphological and biochemical tests using standard bacteriological procedures. Confirmed E. coli isolates were screened for antibiotic susceptibility using the Kirby–Bauer disc diffusion method. The zones of inhibition were interpreted in accordance with Clinical and Laboratory Standards Institute and European Committee on Antimicrobial Susceptibility Testing protocols. The overall prevalence of E. coli in African catfish was 14.0%. Location-specific prevalences of 12.0%, 14.0%, and 16.0% for the Tashan Bama Market, the Monday Market, and the Custom Market were detected, respectively. Skin samples had a significantly (p = 0.046) lower prevalence compared to intestinal samples. Almost all (97.6%) of the isolates were resistant to at least 2 or more different antibiotic agents, with the highest proportion (38.1%) being resistant to 7 antibiotic agents. Most of the isolates (61.9-92.9%) were resistant to pefloxacin, ampicillin, cefepime, tetracycline, augmentin, streptomycin and nalidixic acid. However, there was notable sensitivity to ofloxacin in several isolates (83.3%). Alarmingly, multidrug resistance was detected in 88.1% of isolates with an average MAR index of 0.62, indicating a high prevalence of antibiotic resistance among isolates recovered. To mitigate public health risk, strict hygienic practices in fish processing and marketing, public education on proper cooking, and the enforcement of rational antibiotic use in aquaculture are strongly recommended.
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References
- Adelowo, O. O., Fagade, O. E., and Agersø, Y. (2014). Antibiotic resistance and resistance genes in Escherichia coli from aquaculture environments in Nigeria. J. Appl. Microbio., 117(6): 1623–1634. https://doi.org/10.1111/jam.12641
- Adenaya, A., Adeniran, A. A., Ugwoke, C. L., Saliu, K., Raji, M. A., Rakshit, A., Ribas-Ribas, M. and Könneke, M. (2025). Environmental risk factors contributing to the spread of antibiotic resistance in West Africa. Microorgan., 13(4): 951. Doi: 10.3390/microorganisms13040951
- Agbabiaka, L. A., Onwuzuruigbo, F. O. and Jimoh, O. A. (2025). Threat to fish food safety in Nigeria: role of antimicrobial usage and resistance in aquaculture. Aqu. Rep., 40: 102643. https://doi.org/10.1016/j.aqrep.2025.102643
- Akande, A. and Onyedibe, K. I. (2019). First report of enteropathogenic and enteroinvasive Escherichia coli with multiple antibiotic resistance indices from African catfish (Clarias glariepinus) in Nigeria. African J. Clinic. Experiment. Microbiol., 20(2): 95-103.
- Akinbowale, O. L., Peng, H. and Barton, M. D. (2006). Antimicrobial resistance in bacteria isolated from aquaculture sources in Australia. J. Appl. Microbiol., 100(5): 1103–1113. https://doi.org/10.1111/j.1365-2672.2006.02812.x
- Akter, M., Abedin, M., Mosharaf, M. P., Islam, M. A. I. and Hassan, M. Z. (2022). Prevalence and distribution of antimicrobial resistance profile of Escherichia coli isolated from various local fish markets in Dhaka city, Bangladesh. J. Bangladesh Acad. Sc., 46(1): 9-18. DOI: 10.3329/jbas.v46i1.60344
- Albuquerque, R. (2013). Escherichia coli in seafood: a brief overview. Adv. Biosci. Biotechnol., 4(3): 450-454. DOI: 10.4236/abb.2013.43A060
- Alexandre, L. A., de Silva, A. C., Nascimento, F, L, A., de Melo, A. P. Z. and Verruck, S. (2025). Antimicrobial resistance of Escherichia coli isolated from fish and aquaculture water: an emerging concern for consumers. Letters Appl. Microbiol., 78(8): ovaf099. https://doi.org/10.1093/lambio/ovaf099
- Ali, I. H. A. A., Salman, A. M. A., Abubaker, E. A. A. and Hamad, E. M. (2022). Risk associated with E. coli in marine fish in Port Sudan, Red Sea State, Sudan. European J. Vet. Med., 3(6): 1-6. DOI: 10.24018/ejvetmed.2022.2.6.56
- Bedane, T. D., Megersa, B., Abunna, F., Waktole, H., Woldemariyam, F. T., Tekle, M., Shimelis, E. and Gutema, F. D. (2024). Occurrence, molecular characterization, and antimicrobial susceptibility of sorbitol non-fermenting Escherichia coli in lake water, fish and humans in central Oromia, Ethiopia. Scient. Rep., 14: 12461. https://doi.org/10.1038/s41598-024-61810-z
- Bibi, F., Qaisrani, S. N., Ahmad, A. N., Akhtar, M., Khan, B. N. and Ali, Z. (2015). Occurrence of Salmonella in freshwater fishes: a review. J. Anim. Plan. Scie., 25(3): 303-310.
- Bradley, B., Byrd, K. A., Atkins, M., Isa, S., Akintola, S. l., Fakoya, K. A., Ene-Obong, H. and Thilsted, S. H. (2020). Fish in food systems in Nigeria: a review. World Fish, Program report: 2020-06. https://hdl.handle.net/20.500.12348/4210
- Center for Disease Control (2024). Escherichia coli infection. Available from: https://www.cdc.gov/ecoli/about/index.html. [Last accessed on 14 May 2024].
- Cheesbrough, M. (2017). District laboratory practice in tropical countries (2nd ed.). Cambridge University Press, 62.
- Cheung, C., Naughton, P. J., Dooley, J. S. G., Corcionivoschi, N. and Brooks, C. (2025). The spread of antimicrobial resistance in the aquatic environment from faecal pollution: a scoping review of a multifaceted issue. Environment. Monit. Assess., 197: 467. https://doi.org/10.1007/s10661-025-13860-7
- Chigor, V. N., Umoh, V. J., Smith, S. I., Igbinosa, E. O. and Okoh, A. I. (2010). Multidrug resistance and plasmid patterns of Escherichia coli 0157 and other E. coli isolated from diarrheal stools and surface waters from some selected sources in Zaria. Int. J. Environment. Res. Pub. Heal., 7(10): 3831–3841. DOI: 10.3390/ijerph7103831
- CSLI (2024). Performance standards for antimicrobial susceptibility testing. 34th ed. CSLI Supplements M100. Clinical and Laboratory Standards Institute.
- Deblias, L., Ahmedo, B. U., Ojeda, A., Mummed, B., Wang, Y., Mekonnen, Y. T., Weldesenbet, Y. D., Hassen, K., Brhhane, M., Mckune, S., Havelaar, A. H., Liang, S. and Rajashekara, G. (2025). Assessing fecal contamination from human and environmental sources using Escherichia coli as an indicator in rural eastern Ethiopian household – a cross-sectional study from the EXCAM project. Front. Pub. Heal., 12: 1484808. Doi: 10.3389/fpubh.2024.1484808
- Dewi, R. R., Hassan, L., Daud, H. M., Matori, M. F., Zakaria, Z., Ahmad, N. I., Aziz, S. A. and Jajere, S. M. (2022). On-farm practices associated with multi-drug-resistant Escherichia coli and Vibrio parahaemolyticus derived from cultured fish. Microorgan., 10(8): 1520. https://doi.org/10.3390/microorganisms10081520
- Ehsan, H. (2025). Antibiotic resistance in developing countries: emerging threats and policy responses. Pub. Heal. Challeng., 4: e70034. https://doi.org/10.1002/puh2.70034
- El-Badawy, A., Hamza, D., Ahmed, Z. and Sabry, M. A. (2025). Seasonal and environmental drivers of antibiotic resistance and virulence in Escherichia coli from aquaculture and their public health implications. Scient. Rep., 15: 16100. https://doi.org/10.1038/s41598-025-98498-8.
- Grema, A. H., Geidam, Y. A., Suleiman, A., Gulani, I. A. and Birma, R. B. (2015). Multi-drug-resistant bacteria isolated from fish and fish handlers in Maiduguri, Nigeria. Int. J. Anim. Vet. adv., 7(3): 49-54.
- Hassan, M. M., El-Zowalaty M. E., Lundkvist, Ǻ., Jӓrhult, J. D., Khan, N. M. R., Tnazin, A. Z., Badsha, M. R., Khan, S. A. and Ashour, H. M. (2021). Residual antimicrobial agents in food originating from animals. Trends Foo. Sci. Technol., 111: 141-150. DOI: 10.1016/j.tifs.2021.01.075
- Hatha, A. A. M., Vivekanandhan, A. A., Joice, G. J. and Christol, J. (2005). Antibiotic resistance pattern of motile aeromonads from farm raised freshwater fish. Int. J. Foo. Microbiol., 98(2): 131–134. https://doi.org/10.1016/j.ijfoodmicro.2004.05.017
- Ibrahim, M. A., Ibrahim, S. M. and Abozaid, F. H. (2024). Guidelines of fish supply chain from post harvesting to marketing. Egyptian J. Aqu. Biol. Fish., 28(5): 307-319.
- Krumperman, P. H. (1983). Multiple antibiotic resistance indexing of Escherichia coli to identify high-risk sources of fecal contamination of foods. Appl. Environment. Microbiol., 46(1): 165–170. https://doi.org/10.1128/aem.46.1.165-170.1983Marijani, E. (2022). Prevalence and antimicrobial resistance of bacteria isolated from marine and freshwater fish in Tanzania. Int. J. Microbiol., 2022(1): 4652326. https://doi.org/10.1155/2022/4652326
- Marquis, G. (2022). Microbiological safety and quality of raw, ready-to-eat (RTE) seafood sold in Orange County, California (Master’s thesis, Chapman University).
- Ndukwe, N. N. and Ibrahim, H. I. (2024). Antibiotic resistance genes in freshwater environment: sources, fate, ecological impact and clinical relevance. FUDMA J. Sci., 8(6): 217-233.
- Nowicki, S., de Laurent, Z. R., de Villiers, E. P., Githinji, G. and Charles, K. J. (2021). The utility of Escherichia coli as a contamination indicator for rural drinking water: evidence from whole genome sequencing. PLoS One, 16: e0245910. Doi: 10.1371/journal.pone.0245910
- Pelić, D. L., Radosavljević, V., Pelić, M., Baloš, M. Ž., Puvača, N., Jug-Dujaković, J. and Gavrilović, A. (2024). Antibiotic residues in cultured fish: implications for food safety and regulatory concerns. Fish., 9(12): 484. https://doi.org/10.3390/fishes9120484
- Saba, A. O., Eyo, V. O., Elegbede, I. O., Fakoya, K. A., Ojewole, A. E., Dawodu, F. O., Adewale, R. A. and Amal, M. N. A. (2024). Sustaining the blue bounty: fish food and nutrition security in Nigeria’s evolving blue economy. AIMS Agri. Foo., 9(2): 500-530. DOI: 10.3934/agrfood.2024029
- Sarter, S., Nguyen, H. N. K., Hung, L. T., Lazard, J. and Montet, D. (2007). Antibiotic resistance in Gram-negative bacteria isolated from farmed catfish. Foo. Con., 18(11): 1391–1396. https://doi.org/10.1016/j.foodcont.2006.10.003
- Schmidt, M. A., Blum, M., Donald, J. L., Meenan, R. T., Carrió, E., Poolman, J., Neary, M. P., Verstraeten, T. and Geurtsen, J. (2025). Economic and disease burden associated with invasive Escherichia coli disease in the United States. Infec. Dis. Therap., 14(3): 569-586. DOI: 10.1007/s40121-025-01112-7
- Titilawo, Y., Obi, L. and Okoh, A. (2015). Antimicrobial resistance determinants of Escherichia coli isolates recovered from some rivers in Osun State, South-Western Nigeria: implications for public health. Sci. Tot. Env., 523: 82-94. DOI: 10.1016/j.scitotenv.2015.03.095
- Yohans, H., Mitiku, B. A. and Tassew, H. (2022). Levels of Escherichia coli as bio-indicator of contamination of fish food and antibiotic resistance pattern along the value chain in Northwest Ethiopia. Vet. Med.: Res. Rep., 13: 299-311. DOI: 10.2147/VMRR.S373738
- Zhang, Z., Zhang, Q., Wang, T., Xu, N., Lu, T., Hong, W. and Qian, H. (2022). Assessment of global health risk of antibiotic resistance genes. Nature Com., 13 (1): 1553. DOI: 10.1038/s41467-022-29296-1
References
Adelowo, O. O., Fagade, O. E., and Agersø, Y. (2014). Antibiotic resistance and resistance genes in Escherichia coli from aquaculture environments in Nigeria. J. Appl. Microbio., 117(6): 1623–1634. https://doi.org/10.1111/jam.12641
Adenaya, A., Adeniran, A. A., Ugwoke, C. L., Saliu, K., Raji, M. A., Rakshit, A., Ribas-Ribas, M. and Könneke, M. (2025). Environmental risk factors contributing to the spread of antibiotic resistance in West Africa. Microorgan., 13(4): 951. Doi: 10.3390/microorganisms13040951
Agbabiaka, L. A., Onwuzuruigbo, F. O. and Jimoh, O. A. (2025). Threat to fish food safety in Nigeria: role of antimicrobial usage and resistance in aquaculture. Aqu. Rep., 40: 102643. https://doi.org/10.1016/j.aqrep.2025.102643
Akande, A. and Onyedibe, K. I. (2019). First report of enteropathogenic and enteroinvasive Escherichia coli with multiple antibiotic resistance indices from African catfish (Clarias glariepinus) in Nigeria. African J. Clinic. Experiment. Microbiol., 20(2): 95-103.
Akinbowale, O. L., Peng, H. and Barton, M. D. (2006). Antimicrobial resistance in bacteria isolated from aquaculture sources in Australia. J. Appl. Microbiol., 100(5): 1103–1113. https://doi.org/10.1111/j.1365-2672.2006.02812.x
Akter, M., Abedin, M., Mosharaf, M. P., Islam, M. A. I. and Hassan, M. Z. (2022). Prevalence and distribution of antimicrobial resistance profile of Escherichia coli isolated from various local fish markets in Dhaka city, Bangladesh. J. Bangladesh Acad. Sc., 46(1): 9-18. DOI: 10.3329/jbas.v46i1.60344
Albuquerque, R. (2013). Escherichia coli in seafood: a brief overview. Adv. Biosci. Biotechnol., 4(3): 450-454. DOI: 10.4236/abb.2013.43A060
Alexandre, L. A., de Silva, A. C., Nascimento, F, L, A., de Melo, A. P. Z. and Verruck, S. (2025). Antimicrobial resistance of Escherichia coli isolated from fish and aquaculture water: an emerging concern for consumers. Letters Appl. Microbiol., 78(8): ovaf099. https://doi.org/10.1093/lambio/ovaf099
Ali, I. H. A. A., Salman, A. M. A., Abubaker, E. A. A. and Hamad, E. M. (2022). Risk associated with E. coli in marine fish in Port Sudan, Red Sea State, Sudan. European J. Vet. Med., 3(6): 1-6. DOI: 10.24018/ejvetmed.2022.2.6.56
Bedane, T. D., Megersa, B., Abunna, F., Waktole, H., Woldemariyam, F. T., Tekle, M., Shimelis, E. and Gutema, F. D. (2024). Occurrence, molecular characterization, and antimicrobial susceptibility of sorbitol non-fermenting Escherichia coli in lake water, fish and humans in central Oromia, Ethiopia. Scient. Rep., 14: 12461. https://doi.org/10.1038/s41598-024-61810-z
Bibi, F., Qaisrani, S. N., Ahmad, A. N., Akhtar, M., Khan, B. N. and Ali, Z. (2015). Occurrence of Salmonella in freshwater fishes: a review. J. Anim. Plan. Scie., 25(3): 303-310.
Bradley, B., Byrd, K. A., Atkins, M., Isa, S., Akintola, S. l., Fakoya, K. A., Ene-Obong, H. and Thilsted, S. H. (2020). Fish in food systems in Nigeria: a review. World Fish, Program report: 2020-06. https://hdl.handle.net/20.500.12348/4210
Center for Disease Control (2024). Escherichia coli infection. Available from: https://www.cdc.gov/ecoli/about/index.html. [Last accessed on 14 May 2024].
Cheesbrough, M. (2017). District laboratory practice in tropical countries (2nd ed.). Cambridge University Press, 62.
Cheung, C., Naughton, P. J., Dooley, J. S. G., Corcionivoschi, N. and Brooks, C. (2025). The spread of antimicrobial resistance in the aquatic environment from faecal pollution: a scoping review of a multifaceted issue. Environment. Monit. Assess., 197: 467. https://doi.org/10.1007/s10661-025-13860-7
Chigor, V. N., Umoh, V. J., Smith, S. I., Igbinosa, E. O. and Okoh, A. I. (2010). Multidrug resistance and plasmid patterns of Escherichia coli 0157 and other E. coli isolated from diarrheal stools and surface waters from some selected sources in Zaria. Int. J. Environment. Res. Pub. Heal., 7(10): 3831–3841. DOI: 10.3390/ijerph7103831
CSLI (2024). Performance standards for antimicrobial susceptibility testing. 34th ed. CSLI Supplements M100. Clinical and Laboratory Standards Institute.
Deblias, L., Ahmedo, B. U., Ojeda, A., Mummed, B., Wang, Y., Mekonnen, Y. T., Weldesenbet, Y. D., Hassen, K., Brhhane, M., Mckune, S., Havelaar, A. H., Liang, S. and Rajashekara, G. (2025). Assessing fecal contamination from human and environmental sources using Escherichia coli as an indicator in rural eastern Ethiopian household – a cross-sectional study from the EXCAM project. Front. Pub. Heal., 12: 1484808. Doi: 10.3389/fpubh.2024.1484808
Dewi, R. R., Hassan, L., Daud, H. M., Matori, M. F., Zakaria, Z., Ahmad, N. I., Aziz, S. A. and Jajere, S. M. (2022). On-farm practices associated with multi-drug-resistant Escherichia coli and Vibrio parahaemolyticus derived from cultured fish. Microorgan., 10(8): 1520. https://doi.org/10.3390/microorganisms10081520
Ehsan, H. (2025). Antibiotic resistance in developing countries: emerging threats and policy responses. Pub. Heal. Challeng., 4: e70034. https://doi.org/10.1002/puh2.70034
El-Badawy, A., Hamza, D., Ahmed, Z. and Sabry, M. A. (2025). Seasonal and environmental drivers of antibiotic resistance and virulence in Escherichia coli from aquaculture and their public health implications. Scient. Rep., 15: 16100. https://doi.org/10.1038/s41598-025-98498-8.
Grema, A. H., Geidam, Y. A., Suleiman, A., Gulani, I. A. and Birma, R. B. (2015). Multi-drug-resistant bacteria isolated from fish and fish handlers in Maiduguri, Nigeria. Int. J. Anim. Vet. adv., 7(3): 49-54.
Hassan, M. M., El-Zowalaty M. E., Lundkvist, Ǻ., Jӓrhult, J. D., Khan, N. M. R., Tnazin, A. Z., Badsha, M. R., Khan, S. A. and Ashour, H. M. (2021). Residual antimicrobial agents in food originating from animals. Trends Foo. Sci. Technol., 111: 141-150. DOI: 10.1016/j.tifs.2021.01.075
Hatha, A. A. M., Vivekanandhan, A. A., Joice, G. J. and Christol, J. (2005). Antibiotic resistance pattern of motile aeromonads from farm raised freshwater fish. Int. J. Foo. Microbiol., 98(2): 131–134. https://doi.org/10.1016/j.ijfoodmicro.2004.05.017
Ibrahim, M. A., Ibrahim, S. M. and Abozaid, F. H. (2024). Guidelines of fish supply chain from post harvesting to marketing. Egyptian J. Aqu. Biol. Fish., 28(5): 307-319.
Krumperman, P. H. (1983). Multiple antibiotic resistance indexing of Escherichia coli to identify high-risk sources of fecal contamination of foods. Appl. Environment. Microbiol., 46(1): 165–170. https://doi.org/10.1128/aem.46.1.165-170.1983Marijani, E. (2022). Prevalence and antimicrobial resistance of bacteria isolated from marine and freshwater fish in Tanzania. Int. J. Microbiol., 2022(1): 4652326. https://doi.org/10.1155/2022/4652326
Marquis, G. (2022). Microbiological safety and quality of raw, ready-to-eat (RTE) seafood sold in Orange County, California (Master’s thesis, Chapman University).
Ndukwe, N. N. and Ibrahim, H. I. (2024). Antibiotic resistance genes in freshwater environment: sources, fate, ecological impact and clinical relevance. FUDMA J. Sci., 8(6): 217-233.
Nowicki, S., de Laurent, Z. R., de Villiers, E. P., Githinji, G. and Charles, K. J. (2021). The utility of Escherichia coli as a contamination indicator for rural drinking water: evidence from whole genome sequencing. PLoS One, 16: e0245910. Doi: 10.1371/journal.pone.0245910
Pelić, D. L., Radosavljević, V., Pelić, M., Baloš, M. Ž., Puvača, N., Jug-Dujaković, J. and Gavrilović, A. (2024). Antibiotic residues in cultured fish: implications for food safety and regulatory concerns. Fish., 9(12): 484. https://doi.org/10.3390/fishes9120484
Saba, A. O., Eyo, V. O., Elegbede, I. O., Fakoya, K. A., Ojewole, A. E., Dawodu, F. O., Adewale, R. A. and Amal, M. N. A. (2024). Sustaining the blue bounty: fish food and nutrition security in Nigeria’s evolving blue economy. AIMS Agri. Foo., 9(2): 500-530. DOI: 10.3934/agrfood.2024029
Sarter, S., Nguyen, H. N. K., Hung, L. T., Lazard, J. and Montet, D. (2007). Antibiotic resistance in Gram-negative bacteria isolated from farmed catfish. Foo. Con., 18(11): 1391–1396. https://doi.org/10.1016/j.foodcont.2006.10.003
Schmidt, M. A., Blum, M., Donald, J. L., Meenan, R. T., Carrió, E., Poolman, J., Neary, M. P., Verstraeten, T. and Geurtsen, J. (2025). Economic and disease burden associated with invasive Escherichia coli disease in the United States. Infec. Dis. Therap., 14(3): 569-586. DOI: 10.1007/s40121-025-01112-7
Titilawo, Y., Obi, L. and Okoh, A. (2015). Antimicrobial resistance determinants of Escherichia coli isolates recovered from some rivers in Osun State, South-Western Nigeria: implications for public health. Sci. Tot. Env., 523: 82-94. DOI: 10.1016/j.scitotenv.2015.03.095
Yohans, H., Mitiku, B. A. and Tassew, H. (2022). Levels of Escherichia coli as bio-indicator of contamination of fish food and antibiotic resistance pattern along the value chain in Northwest Ethiopia. Vet. Med.: Res. Rep., 13: 299-311. DOI: 10.2147/VMRR.S373738
Zhang, Z., Zhang, Q., Wang, T., Xu, N., Lu, T., Hong, W. and Qian, H. (2022). Assessment of global health risk of antibiotic resistance genes. Nature Com., 13 (1): 1553. DOI: 10.1038/s41467-022-29296-1
